What does PMV mean in COMPUTING

Python Molecular Viewer (PMV) is a molecular visualization and analysis program written in the Python programming language. It provides a way to visualize, analyze, and manipulate 3D molecular structures for both proteins and small molecules. PMV also allows users to create scripts to perform various tasks, which can be used to automate complex analyses.

Python Molecular Viewer consists of several features that enable it to perform various tasks with ease. This includes the ability to view 3D structures of proteins and small molecules, calculate energy through force fields such as AMBER or CHARMM, dock ligands into receptors, manipulate atomic properties such as charges or dihedrals angles, generate various types of graphics, and interactively control different graphical aspects of the structure.

Python Molecular Viewer can be used for drug design by performing virtual screening against a receptor and predicting binding affinity; it can also be used for protein engineering by mutating residues within the protein; it can be applied in homology modeling where templates can be used from existing structures; PMV is also useful in calculating protein-protein interactions; and it can also be used in generating all-atom representations from coarse grained models.

To get started with using PMV, you must first install the software onto your computer. After that, you will need to familiarise yourself with its basic functionalities such as loading/viewing structure files for both proteins and small molecules, manipulating atomic properties such as charges or dihedral angles, generating graphics outputs such as 2D plots or movies captured from 3D scenes rotating around the molecule of interest, creating scripts that allow automation of repetitive tasks etc. A tutorial guide is available on the PMV website which serves as an introduction guide into using this program.

Yes, there is support available for PMV through its online user forum where experienced users may help new users who are not familiarize themselves with its functionalities yet. For more advanced tasks involving scripting development or plugin creation etc., technical support may be obtained by emailing PMV's developers directly at [email protected]

Yes, PMV runs on any operating system including Windows 7 and above, Mac OS X 10.7 and above versions as well as Linux distributions such as Debian or CentOS 6 onwards releases.

Yes, there is a graphical user interface provided within the main package itself that helps makes interacting with particular functions easier if compared to running all commands from a terminal window only via typing out command lines one after another manually when needed etc. The GUI includes many toolsets required to interactively edit atom properties like charges or coordinates etc., dock ligands into receptors among other key features packaged together nicely for easy access anytime needed.

No, updates generally do not require full reinstallation unless specifically stated on release notes ruling out previous version usages altogether due compatibility issues arising out between changes pushed within new updates versus already existing ones vs newly added modules/plugins etc.